Bioperlcourse-CatherineLetondalandKatjaSchuerer.PDF

Bioperlcourse-CatherineLetondalandKatjaSchuerer.PDF
TableofContents1.Generalintroduction........................................................................11.1.Bioperldocumentation...............................................................11.2.Generalbioperlclasses...............................................................12.Sequences.................................................................................32.1.TheBio::SeqIOclass.............................................................32.1.1.FormatConverter.............................................................32.2.Sequenceclasses....................................................................42.2.1.Introduction..................................................................42.2.2.Buildingmechanismssu妹妹ary................................................52.2.3.AdeeperinsightintotheBio::Seqclass.........................................62.2.4.Bioperl’Sequence’classesstructure...........................................122.3.FeaturesandLocationclasses........................................................132.3.1.Feature.....................................................................132.3.2.Codereading:extractingCDS................................................162.3.3.Tagsystem.................................................................172.3.4.Location....................................................................182.3.5.Graphicalviewoffeatures....................................................202.4.Sequenceanalysistools.............................................................213.Alignments...............................................................................253.1.AlignIO...........................................................................253.2.SimpleAlign.......................................................................263.3.Codereading:protal2dna............................................................304.Analysis....................................................... 本软件ID:11575210